[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 197 items for (author: yin & cc)

EMDB-16933:
Structure of cGAS in complex with SPSB3-ELOBC
Method: single particle / : Xu PB, Ablasser A

EMDB-16936:
cGAS-Nucleosome in complex with SPSB3-ELOBC (composite structure)
Method: single particle / : Xu PB, Ablasser A

EMDB-16937:
Consensus refinement of cGAS/spsb3/EloBC/Nucleosome
Method: single particle / : Xu PB, Ablasser A

EMDB-16938:
human cGAS/spsb3/EloBC in complex with nucleosome (2:2)
Method: single particle / : Xu PB, Ablasser A

PDB-8okx:
Structure of cGAS in complex with SPSB3-ELOBC
Method: single particle / : Xu PB, Ablasser A

PDB-8ol1:
cGAS-Nucleosome in complex with SPSB3-ELOBC (composite structure)
Method: single particle / : Xu PB, Ablasser A

EMDB-40242:
BG505 MD39 SOSIP in complex with Rh.NJ85 wk12 gp120GH, N611/FP, and base epitope polyclonal antibodies
Method: single particle / : Lee WH, Ozorowski G, Torres JL, Ward AB

EMDB-40243:
BG505 MD39 SOSIP in complex with Rh.NJ86 wk12 V1V3, C3V5, N611/FP, and base epitope polyclonal antibodies
Method: single particle / : Lee WH, Ozorowski G, Torres JL, Ward AB

EMDB-40244:
BG505 MD39 SOSIP in complex with Rh.NJ76 wk12 C3V5, N611/FP, and base epitope polyclonal antibodies
Method: single particle / : Lee WH, Ozorowski G, Torres JL, Ward AB

EMDB-40252:
BG505 MD39 SOSIP in complex with Rh.NK04 wk12 gp120 glycan hole and base epitope polyclonal antibodies
Method: single particle / : Lee WS, Ozorowski G, Torres JL, Ward AB

EMDB-40254:
BG505 MD39 SOSIP in complex with Rh.NJ75 wk12 gp120 glycan hole and base epitope polyclonal antibodies
Method: single particle / : Lee WS, Ozorowski G, Torres JL, Ward AB

EMDB-40255:
BG505 MD39 SOSIP in complex with Rh.NJ87 wk12 C3V5 and base epitope polyclonal antibodies
Method: single particle / : Lee WS, Ozorowski G, Torres JL, Ward AB

EMDB-40256:
BG505 MD39 SOSIP in complex with Rh.NJ84 wk12 V1V3, gp120 glycan hole and base epitope polyclonal antibodies
Method: single particle / : Lee WS, Ozorowski G, Torres JL, Ward AB

EMDB-40257:
BG505 MD39 SOSIP in complex with Rh.NJ77 wk12 V1V3, C3V5, N611/FP and base epitope polyclonal
Method: single particle / : Lee WS, Ozorowski G, Torres JL, Ward AB

EMDB-41315:
16-nm repeating structure of A-tubule from mouse sperm flagella
Method: subtomogram averaging / : Chen Z, Shiozak M, Hass KM, Skinner W, Zhao S, Guo C, Polacco BJ, Yu Z, Krogan NJ, Kaake RM, Vale RD, Agard DA

EMDB-41316:
16-nm repeating structure of B-tubule from mouse sperm flagella
Method: subtomogram averaging / : Chen Z, Shiozak M, Hass KM, Skinner W, Zhao S, Guo C, Polacco BJ, Yu Z, Krogan NJ, Kaake RM, Vale RD, Agard DA

EMDB-41317:
CryoET reconstruction of 48-nm repeat doublet microtubule from human sperm
Method: subtomogram averaging / : Chen Z, Shiozak M, Hass KM, Skinner W, Zhao S, Guo C, Polacco BJ, Yu Z, Krogan NJ, Kaake RM, Vale RD, Agard DA

EMDB-41320:
48 nm-repeating structure of doublets from Tektin5-KO mouse sperm axoneme
Method: subtomogram averaging / : Chen Z, Shiozak M, Hass KM, Skinner W, Zhao S, Guo C, Polacco BJ, Yu Z, Krogan NJ, Kaake RM, Vale RD, Agard DA

EMDB-41431:
48-nm repeating structure of doublets from mouse sperm flagella
Method: subtomogram averaging / : Chen Z, Shiozak M, Hass KM, Skinner W, Zhao S, Guo C, Polacco BJ, Yu Z, Krogan NJ, Kaake RM, Vale RD, Agard DA

EMDB-41450:
Focused reconstruction of mouse doublet (register #1)
Method: subtomogram averaging / : Chen Z, Shiozak M, Hass KM, Skinner W, Zhao S, Guo C, Polacco BJ, Yu Z, Krogan NJ, Kaake RM, Vale RD, Agard DA

EMDB-41451:
Focused reconstruction of doublets from mouse sperm (register #2)
Method: subtomogram averaging / : Chen Z, Shiozak M, Hass KM, Skinner W, Zhao S, Guo C, Polacco BJ, Yu Z, Krogan NJ, Kaake RM, Vale RD, Agard DA

PDB-8to0:
48-nm repeating structure of doublets from mouse sperm flagella
Method: subtomogram averaging / : Chen Z, Shiozak M, Hass KM, Skinner W, Zhao S, Guo C, Polacco BJ, Yu Z, Krogan NJ, Kaake RM, Vale RD, Agard DA

EMDB-42429:
Plasminogen binding group A streptococcus M-like protein from AP53 bound to human plasminogen
Method: single particle / : Readnour BM, Tjia-Fleck SK, Castellino FJ, McCann NR

EMDB-41140:
APC/C-CDH1-UBE2C-Ubiquitin-CyclinB-NTD
Method: single particle / : Bodrug T, Welsh KA, Bolhuis DL, Paulakonis E, Martinez-Chacin RC, Liu B, Pinkin N, Bonacci T, Cui L, Xu P, Roscow O, Amann SJ, Grishkovskaya I, Emanuele MJ, Harrison JS, Steimel JP, Hahn KM, Zhang W, Zhong E, Haselbach D, Brown NG

EMDB-41142:
APC/C-CDH1-UBE2C-UBE2S-Ubiquitin-CyclinB
Method: single particle / : Bodrug T, Welsh KA, Bolhuis DL, Paulakonis E, Martinez-Chacin RC, Liu B, Pinkin N, Bonacci T, Cui L, Xu P, Roscow O, Amann SJ, Grishkovskaya I, Emanuele MJ, Harrison JS, Steimel JP, Hahn KM, Zhang W, Zhong E, Haselbach D, Brown NG

PDB-8tar:
APC/C-CDH1-UBE2C-Ubiquitin-CyclinB-NTD
Method: single particle / : Bodrug T, Welsh KA, Bolhuis DL, Paulakonis E, Martinez-Chacin RC, Liu B, Pinkin N, Bonacci T, Cui L, Xu P, Roscow O, Amann SJ, Grishkovskaya I, Emanuele MJ, Harrison JS, Steimel JP, Hahn KM, Zhang W, Zhong E, Haselbach D, Brown NG

PDB-8tau:
APC/C-CDH1-UBE2C-UBE2S-Ubiquitin-CyclinB
Method: single particle / : Bodrug T, Welsh KA, Bolhuis DL, Paulakonis E, Martinez-Chacin RC, Liu B, Pinkin N, Bonacci T, Cui L, Xu P, Roscow O, Amann SJ, Grishkovskaya I, Emanuele MJ, Harrison JS, Steimel JP, Hahn KM, Zhang W, Zhong E, Haselbach D, Brown NG

EMDB-40047:
Structure of human ENPP1 in complex with variable heavy domain VH27.2
Method: single particle / : Carozza JA, Wang H, Solomon PE, Wells JA, Li L

EMDB-33883:
Structural basis of human PRPS2 filaments
Method: single particle / : Lu GM, Hu HH, Liu JL

EMDB-28531:
Cryo-EM structure of SARS-CoV-2 Spike trimer S2D14 in the 3-RBD Down conformation
Method: single particle / : Williams JA, Harshbarger W

EMDB-28532:
Cryo-EM structure of SARS-CoV-2 Spike trimer S2D14 with two RBDs in the open conformation
Method: single particle / : Williams JA, Harshbarger W

EMDB-28533:
Cryo-EM structure of SARS-CoV-2 Spike trimer S2D14 with two RBDs exposed
Method: single particle / : Williams JA, Harshbarger W

PDB-8epn:
Cryo-EM structure of SARS-CoV-2 Spike trimer S2D14 in the 3-RBD Down conformation
Method: single particle / : Williams JA, Harshbarger W

PDB-8epp:
Cryo-EM structure of SARS-CoV-2 Spike trimer S2D14 with two RBDs in the open conformation
Method: single particle / : Williams JA, Harshbarger W

PDB-8epq:
Cryo-EM structure of SARS-CoV-2 Spike trimer S2D14 with two RBDs exposed
Method: single particle / : Williams JA, Harshbarger W

EMDB-28092:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-093
Method: single particle / : Callaway H, Li H, Yu X, Shek J, Saphire EO

EMDB-28090:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-040
Method: single particle / : Li H, Callaway H, Yu X, Shek J, Saphire EO

EMDB-28091:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-045
Method: single particle / : Li H, Callaway H, Yu X, Shek J, Saphire EO

EMDB-28093:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-156
Method: single particle / : Shek J, Callaway H, Li H, Yu X, Saphire EO

EMDB-28094:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-234
Method: single particle / : Callaway H, Li H, Yu X, Shek J, Saphire EO

EMDB-28095:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-260
Method: single particle / : Callaway H, Li H, Yu X, Shek J, Saphire EO

EMDB-28096:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-279
Method: single particle / : Callaway H, Li H, Yu X, Shek J, Saphire EO

EMDB-28097:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-290
Method: single particle / : Yu X, Callaway H, Li H, Shek J, Saphire EO

EMDB-28098:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-294
Method: single particle / : Callaway H, Li H, Yu X, Shek J, Saphire EO

EMDB-28099:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-295
Method: single particle / : Callaway H, Li H, Yu X, Shek J, Saphire EO

EMDB-28100:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-299
Method: single particle / : Callaway H, Li H, Yu X, Shek J, Saphire EO

EMDB-28102:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-334
Method: single particle / : Callaway H, Li H, Yu X, Shek J, Saphire EO

EMDB-28103:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-360
Method: single particle / : Callaway H, Li H, Yu X, Shek J, Saphire EO

EMDB-28104:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-361
Method: single particle / : Callaway H, Li H, Yu X, Shek J, Saphire EO

EMDB-28105:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-362
Method: single particle / : Callaway H, Li H, Yu X, Shek J, Saphire EO

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more